Entry Detail


General Information

Database ID:exR0445012
RNA Name:AGAP6
RNA Type:mRNA
Chromosome:chr10
Starnd:+
Coordinate:
Start Site(bp):49982190End Site(bp):50010499
External Links:ENSG00000204149



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AGAP1
chr2
235494043
236131800
+
AGAP3
chr7
151085831
151144436
+
AGAP4
chr10
45825594
45853875
-
AGAP5
chr10
73674285
73698159
-
AGAP9
chr10
47501854
47523638
-
ATXN1
chr6
16299112
16761491
-
BMPR2
chr2
202376327
202567751
+
MTRNR2L8
chr11
10507894
10509186
-
NACC1
chr19
13116862
13141147
+
RHOG
chr11
3826978
3840959
-
SMC1A
chrX
53374149
53422728
-
TIMM23B
chr10
49942049
49974850
+
TRRAP
chr7
98877933
99050831
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC010451.1
chr5
4974690
5034267
-
AC022400.3
chr10
73674295
73730466
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.