Entry Detail


General Information

Database ID:exR0445032
RNA Name:AGPAT2
RNA Type:mRNA
Chromosome:chr9
Starnd:-
Coordinate:
Start Site(bp):136673143End Site(bp):136687457
External Links:ENSG00000169692



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCA7
chr19
1039997
1065572
+
ARF1
chr1
228082660
228099212
+
CSNK1E
chr22
38290691
38318084
-
DNAJB6
chr7
157335381
157417439
+
ENO1
chr1
8861000
8879190
-
EP300
chr22
41092592
41180077
+
EZR
chr6
158765741
158819368
-
FTL
chr19
48965309
48966879
+
GEMIN5
chr5
154887411
154938211
-
ILF3
chr19
10654261
10692417
+
ITM2C
chr2
230864639
230879248
+
MTA1
chr14
105419820
105470729
+
MYD88
chr3
38138478
38143022
+
NELFE
chr6
31952087
31959038
-
NKX3-2
chr4
13540830
13544508
-
PLXNA3
chrX
154458281
154477779
+
POLD1
chr19
50384204
50418018
+
QPRT
chr16
29663279
29698699
+
RPL13A
chr19
49487554
49492308
+
RPS15
chr19
1438358
1440494
+
SRSF4
chr1
29147743
29181900
-
TNK2
chr3
195863364
195911945
-
TRAPPC12
chr2
3379675
3485094
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC019205.1
chr6
73263212
73301789
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.