Entry Detail


General Information

Database ID:exR0445054
RNA Name:AHRR
RNA Type:mRNA
Chromosome:chr5
Starnd:+
Coordinate:
Start Site(bp):271670End Site(bp):438291
External Links:ENSG00000286169



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ALDOA
chr16
30064164
30070457
+
CARM1
chr19
10871513
10923070
+
COQ2
chr4
83261536
83284914
-
DDA1
chr19
17309518
17323298
+
GATAD1
chr7
92447482
92460075
+
GATM
chr15
45361124
45402327
-
HLA-C
chr6
31268749
31272130
-
HLA-DQA1
chr6
32628179
32647062
+
KIF2C
chr1
44739818
44767767
+
LPGAT1
chr1
211743457
211830763
-
MTMR3
chr22
29883155
30030866
+
NAMPT
chr7
106248298
106286326
-
NDUFS7
chr19
1383527
1395589
+
PDCD6
chr5
271621
314974
+
PHB2
chr12
6965327
6970753
-
PRKRIP1
chr7
102363872
102426676
+
PUS7
chr7
105439661
105522271
-
RPL11
chr1
23691742
23696835
+
RPL13
chr16
89560657
89566828
+
RPS19
chr19
41860255
41872925
+
RPS8
chr1
44775251
44778779
+
SDHA
chr5
218241
257082
+
STRAP
chr12
15882387
15903478
+
TAF1C
chr16
84177847
84187070
-
THAP7
chr22
20999104
21002196
-
TRAPPC6A
chr19
45162928
45178237
-
TRIM65
chr17
75880335
75896951
-
YIF1A
chr11
66284580
66289145
-
ZNF764
chr16
30553764
30558498
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-155-5p
chr21
25573983
25574006
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
MIR155HG
chr21
25561909
25575168
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.