Entry Detail


General Information

Database ID:exR0445118
RNA Name:AL117339.5
RNA Type:mRNA
Chromosome:chr10
Starnd:+
Coordinate:
Start Site(bp):38094368End Site(bp):38360098
External Links:ENSG00000283930



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
CD2BP2
chr16
30350773
30355308
-
GANAB
chr11
62624826
62646726
-
PABPN1
chr14
23321289
23326185
+
PARD3
chr10
34109560
34815325
-
PLXNB1
chr3
48403854
48430086
-
RNF166
chr16
88696499
88706408
-
SAFB
chr19
5623035
5668478
+
SFPQ
chr1
35176378
35193145
-
SLC25A5
chrX
119468422
119471396
+
UCHL1
chr4
41256413
41268455
+
ZNF12
chr7
6688433
6706947
-
ZNF37A
chr10
38094334
38150293
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.