Entry Detail


General Information

Database ID:exR0445119
RNA Name:AL121845.2
RNA Type:mRNA
Chromosome:chr20
Starnd:+
Coordinate:
Start Site(bp):63738270End Site(bp):63740398
External Links:ENSG00000273047



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005832.4
chr12
4604944
4662643
+
AL121845.3
chr20
63708864
63739103
+
AP2S1
chr19
46838136
46850992
-
ARFGEF1
chr8
67173511
67343781
-
ARRDC1
chr9
137605685
137615360
+
C6orf89
chr6
36871870
36928964
+
CELF1
chr11
47465933
47565569
-
GPX4
chr19
1103926
1106791
+
HGS
chr17
81683326
81703138
+
LIME1
chr20
63736283
63739103
+
MT-CO3
chrMT
9207
9990
+
NDUFA9
chr12
4649095
4694317
+
PCDH7
chr4
30720415
31146805
+
PLSCR3
chr17
7389727
7394842
-
PPP3CA
chr4
101023409
101348278
-
PTPN6
chr12
6946468
6961316
+
RAC1
chr7
6374527
6403967
+
RPS16
chr19
39433137
39435949
-
S100A10
chr1
151982915
151993859
-
SLC2A4RG
chr20
63739776
63744050
+
TICRR
chr15
89575469
89631056
+
TMEM256-PLSCR3
chr17
7389734
7404097
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005833.2
chr12
4804499
4830747
-
NEAT1
chr11
65422774
65445540
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.