Entry Detail


General Information

Database ID:exR0445121
RNA Name:AL133352.1
RNA Type:mRNA
Chromosome:chr10
Starnd:-
Coordinate:
Start Site(bp):100505628End Site(bp):100529881
External Links:ENSG00000255339



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
COPE
chr19
18899514
18919387
-
PRPF19
chr11
60890547
60906585
-
ANKRD26
chr10
26991914
27100498
-
ATP8B3
chr19
1782075
1812276
-
MAPK8IP3
chr16
1706183
1770317
+
VPS53
chr17
508668
721717
-
GSPT2
chrX
51743442
51746232
+
WASF2
chr1
27404230
27490167
-
UBC
chr12
124911604
124917368
-
VASP
chr19
45506579
45526983
+
NAAA
chr4
75913660
75941013
-
DIP2B
chr12
50504985
50748657
+
PATL2
chr15
44665732
44711316
-
SSU72
chr1
1541673
1574863
-
NONO
chrX
71283192
71301168
+
NUP54
chr4
76114659
76148444
-
AC245033.1
chr15
82536788
82573194
-
NAGLU
chr17
42536241
42544449
+
ATP5MF-PTCD1
chr7
99419749
99466197
-
SIX5
chr19
45764785
45769252
-
TRABD
chr22
50185915
50199598
+
OAZ1
chr19
2269509
2273490
+
TUT1
chr11
62575045
62591637
-
SLX4
chr16
3581181
3611606
-
DKK3
chr11
11956207
12009769
-
ELP2
chr18
36129444
36180557
+
DDX23
chr12
48829756
48852842
-
ERI2
chr16
20780193
20900349
-
ACVR2A
chr2
147844517
147930826
+
HLA-E
chr6
30489509
30494194
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-3648
chr21
8987026
8987046
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC010655.2
chr7
128455937
128469197
+
AC018521.1
chr17
47945424
47981736
+
AC132217.1
chr11
2129121
2129964
-
AD000090.1
chr19
35557956
35581954
+
AL136985.3
chr1
58715609
58771295
+
AL359715.3
chr6
80355424
80356859
+
FOXD3-AS1
chr1
63320884
63324441
-
GAS5
chr1
173858559
173868882
-
MALAT1
chr11
65497688
65506516
+
SNHG14
chr15
24978583
25420336
+
Z95331.1
chr22
45657019
45680130
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.