Entry Detail


General Information

Database ID:exR0445152
RNA Name:ALDH6A1
RNA Type:mRNA
Chromosome:chr14
Starnd:-
Coordinate:
Start Site(bp):74056847End Site(bp):74084492
External Links:ENSG00000119711



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
SYNCRIP
chr6
85607785
85643792
-
SRPRB
chr3
133784023
133825772
+
HNRNPA1L2
chr13
52642425
52643796
+
SLC12A2
chr5
128083766
128189677
+
KIAA0556
chr16
27550133
27780369
+
RPL8
chr8
144789765
144792587
-
ATP5PB
chr1
111448864
111462773
+
CFL1
chr11
65823022
65862026
-
NOP53
chr19
47745546
47757058
+
SFRP2
chr4
153780591
153789083
-
METAP1
chr4
98995659
99062809
+
PPP1R37
chr19
45091396
45148077
+
DNAJA2
chr16
46955362
46973674
-
ZNF544
chr19
58228594
58277495
+
COLGALT1
chr19
17555649
17583162
+
SRSF1
chr17
58000919
58007346
-
BRD2
chr6
32968594
32981505
+
EIF1
chr17
41688885
41692668
+
BOD1
chr5
173607145
173616659
-
BCL2L13
chr22
17628855
17730855
+
COPS4
chr4
83034447
83075818
+
TSPAN3
chr15
77041404
77083984
-
CCND1
chr11
69641156
69654474
+
LIN28A
chr1
26410817
26429728
+
PTPRU
chr1
29236516
29326813
+
CALM3
chr19
46601074
46610782
+
AC015813.2
chr17
57989038
58007246
-
RACK1
chr5
181236897
181248096
-
PRPSAP2
chr17
18840085
18931287
+
HSP90AB1
chr6
44246166
44253888
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
PSMA3-AS1
chr14
58265365
58298134
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.