Entry Detail


General Information

Database ID:exR0446521
RNA Name:CALM3
RNA Type:mRNA
Chromosome:chr19
Starnd:+
Coordinate:
Start Site(bp):46601074End Site(bp):46610782
External Links:ENSG00000160014



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ALDH6A1
chr14
74056847
74084492
-
ADAMTSL4
chr1
150549369
150560937
+
ABHD12
chr20
25294742
25390835
-
AGPAT1
chr6
32168212
32178096
-
ACOT13
chr6
24667035
24705065
+
AHCY
chr20
34280268
34311802
-
AGO1
chr1
35869808
35930532
+
ALDH7A1
chr5
126531200
126595362
-
AAMDC
chr11
77821109
77918432
+
ADAR
chr1
154582057
154628013
-
AHSA1
chr14
77457870
77469472
+
AC006486.1
chr19
42234583
42255132
-
AC010422.3
chr19
12643831
12648397
-
ABI2
chr2
203328239
203447728
+
AL121594.1
chr14
35122549
35317474
+
ALDH18A1
chr10
95605941
95656711
-
AC099811.2
chr17
42119674
42154916
-
ABCC5
chr3
183919934
184017939
-
ACTG1
chr17
81509971
81523847
-
AIF1L
chr9
131096476
131123152
+
AC245033.1
chr15
82536788
82573194
-
ACACA
chr17
37084992
37406836
-
ADAM19
chr5
157395534
157575775
-
ABTB1
chr3
127672935
127680926
+
ACTB
chr7
5527148
5563784
-
ACIN1
chr14
23058564
23095614
-
AGAP1
chr2
235494043
236131800
+
AC009133.6
chr16
29812261
29820092
+
AARSD1
chr17
42950526
42964498
-
AC090360.1
chr18
80034346
80097088
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-34a-5p
chr1
9151735
9151756
-
hsa-miR-205-5p
chr1
209432166
209432187
+
hsa-miR-449a
chr5
55170586
55170607
-
hsa-miR-449b-5p
chr5
55170706
55170727
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC016876.2
chr17
7581964
7584086
-
AC026362.1
chr12
122975320
122982907
+
AC079781.5
chr7
97851688
97972985
-
AC093503.2
chr19
46609277
46610779
-
AC125807.2
chr12
3041437
3044950
+
AD000090.1
chr19
35557956
35581954
+
AL022311.1
chr22
37876148
37895563
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.