Entry Detail


General Information

Database ID:exR0446787
RNA Name:CCDC88C
RNA Type:mRNA
Chromosome:chr14
Starnd:-
Coordinate:
Start Site(bp):91271323End Site(bp):91417844
External Links:ENSG00000015133



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC090004.1
chr3
14135217
14148252
+
AC245033.1
chr15
82536788
82573194
-
ACTN1
chr14
68874143
68979440
-
ADORA2A
chr22
24417879
24442357
+
AGTPBP1
chr9
85546539
85742029
-
AGTRAP
chr1
11736084
11754802
+
AIG1
chr6
143060496
143341058
+
AKT1S1
chr19
49869033
49878459
-
AL590132.1
chr1
210858125
211134146
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-520h
chr19
53742566
53742587
+
hsa-miR-361-3p
chrX
85903641
85903663
-
hsa-miR-574-5p
chr4
38868056
38868078
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC084824.5
chr12
32736930
32737660
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.