exRNAdisease

General Information

Database ID:

exR0728568

RNA Name:

hsa-miR-130a-3p

RNA Type:

miRNA

Chromosome:

chr11

Starnd:

Coordinate:

Start Site(bp):

57641252

End Site(bp):

57641273

External Links:

Disease Information

Disease Name:	Prostate Cancer
Disease Category:	Cancers
MeSH ID:	D011471
Type:	Neoplasms/Digestive System Neoplasms
Alias:	Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID:	GSE54010
Description:	miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH)
Experimental Design:	Cancer vs Control
Case Disease Type:	Prostate Cancer
Case Disease SubType:	Advanced Prostate Cancer
Case Sample:	Advanced Prostate Cancer
Control Sample:	Benign Prostatic Hyperplasia
Number of Case:	7
Number of Control:	5
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
ZNF74	chr22	20394115	20408461	+
E2F3	chr6	20401879	20493714	+
CD151	chr11	832887	839831	+
LENG8	chr19	54448887	54462037	+
MTMR9	chr8	11284816	11328146	+
LYSMD2	chr15	51723011	51751585	-
SH3PXD2A	chr10	103594027	103855543	-
STK4	chr20	44966479	45080021	+
STK38L	chr12	27243968	27325959	+
TOMM70	chr3	100363431	100401089	-
G6PD	chrX	154531391	154547572	-
UBQLN1	chr9	83659968	83707958	-
SLC12A7	chr5	1050384	1112063	-
AKAP10	chr17	19904302	19978343	-
STARD13	chr13	33103137	33350630	-
ZBTB7B	chr1	155002630	155018522	+
CALU	chr7	128739292	128773400	+
ZNF12	chr7	6688433	6706947	-
TMF1	chr3	69019827	69052339	-
SNX27	chr1	151612006	151699091	+
PTEN	chr10	87863625	87971930	+
GPRC5A	chr12	12890782	12917937	+
PCYOX1	chr2	70257386	70281185	+
ATP6V1C1	chr8	103021063	103073051	+
TRIM2	chr4	153152342	153339317	+
MSTO1	chr1	155610188	155614971	+
GAS2L1	chr22	29306582	29312785	+
FAM102A	chr9	127940582	127980989	-
LIPA	chr10	89213569	89414557	-
PDRG1	chr20	31944337	31952046	-

miRNA targets:

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0000591	chr15	41961025	41962156	+
hsa_circ_0001454	chr4	154524454	154533552	+
hsa_circ_0000384	chr12	27867712	27877119	+
hsa_circ_0001723	chr7	91924202	91948826	+
hsa_circ_0000892	chr19	11941431	12014514	+
hsa_circ_0001605	chr6	42903447	42905047	+
hsa_circ_0000155	chr1	168007608	168014465	+
hsa_circ_0001495	chr5	68470703	68471364	+
hsa_circ_0000943	chr19	47421744	47440665	+
hsa_circ_0000018	chr1	15860731	15863309	+

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC011503.2	chr19	23927788	23929287	+
AC021092.1	chr19	44103007	44113183	-
AC135050.6	chr16	31122235	31124064	+
AC234582.1	chr1	155195004	155205495	+
AL031595.3	chr22	44139365	44153626	+
AL049840.4	chr14	103694516	103695050	-
AL158206.1	chr9	19453209	19455173	+
AL158825.2	chr9	75009828	75016036	-
AL603839.3	chr1	40493157	40508661	-
CKMT2-AS1	chr5	81201341	81301565	-
H19	chr11	1995176	2001470	-
HAGLR	chr2	176164051	176188958	-
KCNQ1OT1	chr11	2608328	2699994	-
LINC01089	chr12	121795267	121803906	-
MIR17HG	chr13	91347820	91354579	+
NEAT1	chr11	65422774	65445540	+
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE54010
Sample Source:	Urine
Source Fraction:	Urine
Platform:	GPL15159
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	1183
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA).
RNA library preparation protocol:	400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference