Entry Detail



General Information

Database ID:exR0766206
RNA Name:AC004687.1
RNA Type:lncRNA
Chromosome:chr17
Starnd:-
Coordinate:
Start Site(bp):58330884End Site(bp):58332508
External Links:ENSG00000265206



Disease Information

Disease Name:Lung Cancer
Disease Category:Cancers
MeSH ID:D008175
Type:Neoplasms/Respiratory Tract Neoplasms
Alias:Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung



Expression Detail

GEO ID:GSE69732
Description:Circulating RNAs profile in non-small cell lung cancer patients
Experimental Design:Cancer vs Control
Case Disease Type:Lung Cancer
Case Disease SubType:Non-Small Cell Lung Cancer
Case Sample:Non-Small Cell Lung Cancer
Control Sample:Healthy
Number of Case:3
Number of Control:3
Number of Samples:6





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
CCDC126
chr7
23597382
23644708
+
ENO1
chr1
8861000
8879190
-
VPS53
chr17
508668
721717
-
ZMIZ2
chr7
44748581
44769881
+
NME4
chr16
396725
410367
+
MCM7
chr7
100092728
100101940
-
RPL27
chr17
42998273
43002959
+
GRINA
chr8
143990056
143993415
+
AP002990.1
chr11
62559603
62591531
-
RPS14
chr5
150442635
150449739
-
MAST2
chr1
45786987
46036122
+
ACTB
chr7
5527148
5563784
-
MRPL18
chr6
159789812
159798436
+
CCL3
chr17
36088256
36090169
-
MBD3
chr19
1573596
1592865
-
MT-ATP6
chrMT
8527
9207
+
TUBB
chr6
30720352
30725426
+
SMAD4
chr18
51028394
51085045
+
TPI1
chr12
6867119
6870948
+
B2M
chr15
44711487
44718877
+
CFL1
chr11
65823022
65862026
-
PDE4A
chr19
10416773
10469630
+
TMSB4X
chrX
12975110
12977227
+
C6orf223
chr6
44000580
44007612
+
NDE1
chr16
15643267
15726353
+
TSC22D4
chr7
100463359
100479232
-
EEF1G
chr11
62559596
62574086
-
EIF1
chr17
41688885
41692668
+
MT-ATP8
chrMT
8366
8572
+
SMAP2
chr1
40344850
40423326
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-101-3p
chr1
65058442
65058462
-
hsa-miR-142-5p
chr17
58331283
58331303
-
hsa-miR-142-3p
chr17
58331245
58331267
-
hsa-miR-134-5p
chr14
101054694
101054715
+
hsa-miR-512-3p
chr19
53666729
53666750
+
hsa-miR-520f-3p
chr19
53682213
53682234
+
hsa-miR-3118
chr15
21843793
21843815
+
hsa-miR-5590-3p
chr2
134857853
134857873
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC138761.1
chr17
22266395
22288301
+
AP001496.2
chr18
5232876
5238526
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:26417025
Title:Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison.
Author:Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC.
Journal:Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30.
Description:Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.