exRNAdisease

Entry Detail

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General Information

Database ID: exR0766592 RNA Name: SNHG1 RNA Type: lncRNA Chromosome: chr11 Starnd: - Coordinate: Start Site(bp): 62851984 End Site(bp): 62855953 External Links: ENSG00000255717

Disease Information

Disease Name: Lung Cancer Disease Category: Cancers MeSH ID: D008175 Type: Neoplasms/Respiratory Tract Neoplasms Alias: Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung

Expression Detail

GEO ID: GSE69732 Description: Circulating RNAs profile in non-small cell lung cancer patients Experimental Design: Cancer vs Control Case Disease Type: Lung Cancer Case Disease SubType: Non-Small Cell Lung Cancer Case Sample: Non-Small Cell Lung Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD18 chr4 127965306 128039927 + AC104109.3 chr5 134167170 134226071 - ACBD5 chr10 27195214 27242130 - AFG3L2 chr18 12328944 12377227 - AGK chr7 141551278 141655244 + AKR1A1 chr1 45550543 45570049 + AL121594.1 chr14 35122549 35317474 + AL132780.3 chr14 22946270 22982258 - AL136454.1 chr1 192716132 192716653 + AL139011.2 chr1 160216800 160285130 - AATF chr17 36948954 37056871 + AD000671.2 chr19 35739252 35745432 - ADA chr20 44619522 44652233 - AKT3 chr1 243488233 243851079 - AL353588.1 chr6 44273194 44378957 + AL365205.1 chr6 41780349 41790141 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3163 chr11 66934476 66934497 - hsa-miR-361-3p chrX 85903641 85903663 - hsa-miR-7151-5p chr10 67403388 67403410 - hsa-miR-670-3p chr11 43559714 43559734 + hsa-miR-3918 chr6 158764715 158764735 - hsa-miR-3179 chr16 18411905 18411926 - hsa-miR-577 chr4 114656774 114656794 + hsa-miR-181b-5p chr9 124693725 124693747 + hsa-miR-556-5p chr1 162342561 162342582 + hsa-miR-2278 chr9 94809977 94809998 + hsa-miR-18a-5p chr13 91350756 91350778 + hsa-miR-450b-5p chrX 134540231 134540252 - hsa-miR-590-5p chr7 74191213 74191234 + hsa-miR-1276 chr15 85770548 85770567 - hsa-miR-101-3p chr1 65058442 65058462 - hsa-miR-376b-3p chr14 101040497 101040518 + hsa-miR-181c-5p chr19 13874725 13874746 + hsa-miR-424-5p chrX 134546680 134546701 - hsa-miR-421 chrX 74218392 74218414 - hsa-miR-760 chr1 93846880 93846899 + hsa-miR-2115-3p chr3 48316381 48316402 - hsa-miR-320a-3p chr8 22244975 22244996 - hsa-miR-15a-5p chr13 50049167 50049188 - hsa-miR-154-5p chr14 101059769 101059790 + hsa-miR-182-5p chr7 129770447 129770470 - hsa-miR-345-3p chr14 100307912 100307933 + hsa-miR-488-3p chr1 177029374 177029394 - hsa-miR-409-5p chr14 101065314 101065336 + hsa-miR-2355-3p chr2 207109999 207110020 - hsa-miR-3127-5p chr2 96798288 96798310 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC023509.1 chr12 53441741 53467528 + AC097478.1 chr4 89743792 89744305 + AC145207.5 chr17 81878425 81881106 - AC242842.1 chr1 149607765 149612402 + AL022311.1 chr22 37876148 37895563 + AL132780.1 chr14 22929607 22956374 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 26417025 Title: Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison. Author: Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC. Journal: Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30. Description: Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.