exRNAdisease

Entry Detail

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General Information

Database ID: exR0766597 RNA Name: SNHG15 RNA Type: lncRNA Chromosome: chr7 Starnd: - Coordinate: Start Site(bp): 44983023 End Site(bp): 44986961 External Links: ENSG00000232956

Disease Information

Disease Name: Lung Cancer Disease Category: Cancers MeSH ID: D008175 Type: Neoplasms/Respiratory Tract Neoplasms Alias: Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung

Expression Detail

GEO ID: GSE69732 Description: Circulating RNAs profile in non-small cell lung cancer patients Experimental Design: Cancer vs Control Case Disease Type: Lung Cancer Case Disease SubType: Non-Small Cell Lung Cancer Case Sample: Non-Small Cell Lung Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC093525.2 chr16 2496032 2520218 + ACTG1 chr17 81509971 81523847 - ADAMTS7 chr15 78759206 78811464 - ADH5 chr4 99070978 99088801 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-18a-5p chr13 91350756 91350778 + hsa-miR-141-3p chr12 6964155 6964176 + hsa-miR-153-3p chr2 219294126 219294147 - hsa-miR-188-5p chrX 50003517 50003537 + hsa-miR-200a-3p chr1 1167916 1167937 + hsa-miR-345-5p chr14 100307876 100307897 + hsa-miR-346 chr10 86264747 86264769 - hsa-miR-18b-5p chrX 134170084 134170106 - hsa-miR-451a chr17 28861403 28861424 - hsa-miR-483-3p chr11 2134142 2134162 - hsa-miR-371a-5p chr19 53787680 53787699 + hsa-miR-873-5p chr9 28888925 28888945 - hsa-miR-1323 chr19 53671978 53671999 + hsa-miR-548o-3p chr20 38516607 38516628 + hsa-miR-1252-5p chr12 79419261 79419282 + hsa-miR-4735-3p chr1 196582417 196582437 - hsa-miR-506-5p chrX 147230788 147230809 - hsa-miR-1180-5p chr17 19344548 19344568 - hsa-miR-6866-3p chr17 40161980 40162001 + circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 26417025 Title: Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison. Author: Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC. Journal: Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30. Description: Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.