exRNAdisease

Entry Detail

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General Information

Database ID: exR0766598 RNA Name: SNHG16 RNA Type: lncRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 76557764 End Site(bp): 76565348 External Links: ENSG00000163597

Disease Information

Disease Name: Lung Cancer Disease Category: Cancers MeSH ID: D008175 Type: Neoplasms/Respiratory Tract Neoplasms Alias: Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung

Expression Detail

GEO ID: GSE69732 Description: Circulating RNAs profile in non-small cell lung cancer patients Experimental Design: Cancer vs Control Case Disease Type: Lung Cancer Case Disease SubType: Non-Small Cell Lung Cancer Case Sample: Non-Small Cell Lung Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC015802.6 chr17 76563710 76570544 - AC015813.2 chr17 57989038 58007246 - AC245033.1 chr15 82536788 82573194 - ACTG1 chr17 81509971 81523847 - AGPAT1 chr6 32168212 32178096 - AL022238.4 chr22 40346529 40410054 + AC138969.1 chr16 16317444 16350590 + ACP5 chr19 11574660 11579008 - ADAMTS15 chr11 130448974 130476641 + AIMP1 chr4 106315544 106349456 + ALDH3A2 chr17 19648136 19685760 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-195-5p chr17 7017667 7017687 - hsa-miR-15b-5p chr3 160404607 160404628 + hsa-miR-421 chrX 74218392 74218414 - hsa-miR-302d-3p chr4 112648006 112648028 - hsa-miR-216a-3p chr2 55988981 55989002 - hsa-miR-4458 chr5 8460933 8460951 + hsa-miR-500b-5p chrX 50010682 50010699 + hsa-miR-4500 chr13 87618671 87618687 - hsa-miR-372-3p chr19 53787931 53787953 + hsa-miR-508-3p chrX 147236945 147236967 - hsa-miR-510-5p chrX 147272378 147272399 - hsa-miR-3619-5p chr22 46091059 46091080 + hsa-miR-2467-3p chr2 239351732 239351753 - hsa-miR-2681-3p chr13 101967665 101967686 - hsa-miR-664b-3p chrX 154768635 154768656 + hsa-miR-761 chr1 51836375 51836396 - hsa-miR-30b-5p chr8 134800570 134800591 - hsa-miR-5047 chr17 64501230 64501250 - hsa-miR-6823-3p chr3 48549961 48549981 - hsa-miR-196b-5p chr7 27169528 27169549 - hsa-let-7i-5p chr12 62603691 62603712 + hsa-miR-193a-5p chr17 31560016 31560037 + hsa-miR-30d-5p chr8 134804919 134804940 - hsa-miR-20a-5p chr13 91351072 91351094 + hsa-miR-141-3p chr12 6964155 6964176 + hsa-miR-212-3p chr17 2050290 2050310 - hsa-let-7c-5p chr21 16539838 16539859 + hsa-miR-1301-3p chr2 25328651 25328674 - hsa-miR-424-5p chrX 134546680 134546701 - hsa-miR-485-5p chr14 101055427 101055448 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC007996.1 chr18 26542971 26545791 - AC093827.4 chr4 86924630 86936202 - AC138904.1 chr16 28284885 28292064 - AC245014.3 chr1 145281116 145281462 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 26417025 Title: Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison. Author: Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC. Journal: Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30. Description: Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.