exRNAdisease

Entry Detail

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General Information

Database ID: exR0766600 RNA Name: SNHG20 RNA Type: lncRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 77086716 End Site(bp): 77099902 External Links: ENSG00000234912

Disease Information

Disease Name: Lung Cancer Disease Category: Cancers MeSH ID: D008175 Type: Neoplasms/Respiratory Tract Neoplasms Alias: Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung

Expression Detail

GEO ID: GSE69732 Description: Circulating RNAs profile in non-small cell lung cancer patients Experimental Design: Cancer vs Control Case Disease Type: Lung Cancer Case Disease SubType: Non-Small Cell Lung Cancer Case Sample: Non-Small Cell Lung Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-19a-3p chr13 91350939 91350961 + hsa-miR-19b-3p chr13 91351245 91351267 + hsa-miR-140-5p chr16 69933103 69933124 + hsa-miR-342-3p chr14 100109715 100109737 + hsa-miR-452-5p chrX 151959678 151959699 - hsa-miR-495-3p chr14 101033804 101033825 + hsa-miR-520g-3p chr19 53722220 53722243 + hsa-miR-520h chr19 53742566 53742587 + hsa-miR-513a-5p chrX 147213538 147213555 - hsa-miR-3150b-3p chr8 95072924 95072944 - hsa-miR-4676-3p chr10 72721072 72721093 + hsa-miR-4784 chr2 131491208 131491227 - hsa-miR-2467-3p chr2 239351732 239351753 - hsa-miR-5688 chr3 85385761 85385782 + hsa-miR-892c-3p chrX 145992760 145992781 - hsa-miR-6516-5p chr17 77089428 77089449 + hsa-miR-6516-3p chr17 77089469 77089490 + circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 26417025 Title: Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison. Author: Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC. Journal: Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30. Description: Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.