exRNAdisease

Entry Detail

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General Information

Database ID: exR0783520 RNA Name: AC067930.1 RNA Type: lncRNA Chromosome: chr8 Starnd: + Coordinate: Start Site(bp): 143579636 End Site(bp): 143580670 External Links: ENSG00000254741

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand MATN2 chr8 97868840 98036724 + SPEN chr1 15836095 15940456 + DNAJC1 chr10 21756548 22003769 - PTDSS1 chr8 96261902 96336995 + PTCH2 chr1 44819844 44843253 - GK5 chr3 142157527 142225592 - EFNA5 chr5 107376889 107670937 - SMARCC1 chr3 47585269 47782106 - CALCOCO2 chr17 48830988 48866522 + RPL8 chr8 144789765 144792587 - GATA4 chr8 11676959 11760002 + STRN4 chr19 46719511 46746994 - RIMBP3C chr22 21545357 21551461 - LENG8 chr19 54448887 54462037 + PCNX2 chr1 232983435 233295725 - METTL16 chr17 2405562 2511891 - ARHGEF2 chr1 155946851 156007070 - GPRASP2 chrX 102712176 102717733 + MTDH chr8 97644184 97730260 + PPT2-EGFL8 chr6 32153845 32171978 + BRWD1 chr21 39184176 39321559 - MAPK8IP3 chr16 1706183 1770317 + MTRNR2L1 chr17 22523111 22524663 + SFPQ chr1 35176378 35193145 - CKMT1A chr15 43692886 43699222 + FBL chr19 39834458 39846379 - RPS19 chr19 41860255 41872925 + NID1 chr1 235975830 236065109 - BPTF chr17 67825503 67984378 + SPTBN2 chr11 66685248 66729226 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-552-3p chr1 34669614 34669634 - hsa-miR-579-3p chr5 32394392 32394414 - hsa-miR-671-5p chr7 151238449 151238471 + hsa-miR-1301-3p chr2 25328651 25328674 - hsa-miR-1252-5p chr12 79419261 79419282 + hsa-miR-3126-5p chr2 69103691 69103712 + hsa-miR-3179 chr16 18411905 18411926 - hsa-miR-3194-5p chr20 51452948 51452968 - hsa-miR-5047 chr17 64501230 64501250 - hsa-miR-664b-3p chrX 154768635 154768656 + hsa-miR-6875-5p chr7 100868041 100868061 + hsa-miR-4691-3p chr11 68033949 68033971 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC027307.3 chr19 1440839 1441938 + AC067930.4 chr8 143573490 143577397 + AC124045.1 chr3 44667412 44669364 + AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL356488.2 chr1 109100193 109100619 + AP000233.2 chr21 25095022 25103670 + NEAT1 chr11 65422774 65445540 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.