exRNAdisease

Entry Detail

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General Information

Database ID: exR0784134 RNA Name: SCARNA9 RNA Type: lncRNA Chromosome: chr11 Starnd: + Coordinate: Start Site(bp): 93721513 End Site(bp): 93721865 External Links: ENSG00000254911

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACTG1 chr17 81509971 81523847 - ABCB5 chr7 20615207 20777038 + AKIRIN1 chr1 38991276 39006059 + ALDH3A2 chr17 19648136 19685760 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-199a-3p chr1 172144554 172144575 - hsa-miR-210-3p chr11 568112 568133 - hsa-miR-216a-5p chr2 55989020 55989041 - hsa-miR-376a-3p chr14 101040825 101040845 + hsa-miR-379-5p chr14 101022071 101022091 + hsa-miR-151a-3p chr8 140732587 140732607 - hsa-miR-329-3p chr14 101026834 101026855 + hsa-miR-376b-3p chr14 101040497 101040518 + hsa-miR-524-5p chr19 53711017 53711038 + hsa-miR-520d-5p chr19 53720111 53720130 + hsa-miR-199b-3p chr9 128244745 128244766 - hsa-miR-362-3p chrX 50009005 50009026 + hsa-miR-3129-5p chr2 189133082 189133103 - hsa-miR-3529-5p chr15 88611894 88611915 - circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.